Publications since 2013:
For a complete list please see lab website.
Zheng Y, Dimond KL, Graur D, Zufall RA. 2013. Patterns of intron sequence conservation in the genus Tetrahymena. Protist Genomics 1:19–24.
Graur D, Zheng Y, Price N, Azevedo RB, Zufall RA, Elhaik E. 2013. On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE. Genome Biol. Evol. 5:578-590.
Elhaik E, Graur D. 2013. IsoPlotter+: A tool for studying the compositional architecture of genomes. ISRN Bioinformatics 2013: 725434 (6 pages) http://dx.doi.org/10.1155/2013/725434.
Ezawa K, Landan G, Graur D. 2013. Detecting negative selection on recurrent mutations using gene genealogy. BMC Genet. 14:37.
Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Hunt BG, Hagen D, Viljakainen L, Reese J, Graur D, Elhaik E, Glastad KM, Kriventseva EV, Wen J, Parker B, Cash E, Privman E, Muñoz-Torres M, Berger SL, Boomsma JJ, Bornberg-Bauer E, Currie C, Elsik C, Suen G, Goodisman MAD, Keller L, Liebig J, Rawls A, Reinberg D, Smith CD, Smith CR, Tsutsui N, Wurm Y, Zdobnov EM, Gadau J. 2013. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Res. 23:1235-1247.
Elhaik E, Tatarinova TV, Klyosov AA, Graur D. 2014. The 'extremely ancient' chromosome that isn't: a forensic bioinformatic investigation of Albert Perry's X-degenerate portion of the Y chromosome. Eur. J. Hum. Genet. 22:1111-1116.
Elsik CG, Worley KC, Bennett AK, Beye M, Camara FC, Childers CP, de Graaf DC, Debsyer G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RFA, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Van Vaerenbergh M, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA. 2013. Finding the missing honey bee genes: lessons learned from a genome upgrade. BMC Genomics 15:86.
Woehle C, Kusdian G, Radine C, Graur D, Landan G, Gould SB. 2014. The parasite Trichomonas vaginalis expresses thousands of pseudogenes and lncRNAs independently from neighboring genes. BMC Genomics 15:906
Elhaik E, Graur D. 2014. A comparative study and a phylogenetic exploration of the compositional architectures of mammalian nuclear genomes. PLoS Comput. Biol. 10:e1003925.
Elhaik E, Tatarinova TV, Klyosov AA, Graur D. 2014. An extended reply to Mendez et al.: The 'extremely ancient' chromosome that still isn't. arXiv:1410.3972
Graur D, Zheng Y, Azevedo RB. 2015. An evolutionary classification of genomic function. Genome Biol. Evol. 7:642-645.
Elhaik E, Tatarinova TV, Klyosov AA, Graur D. 2015. Reply to Mendez et al: The 'extremely ancient' chromosome that still isn't. Eur. J. Hum. Genet. 23:567-568.
Price N, Graur D. 2016. Are synonymous sites in primates and rodents functionally constrained? J. Mol. Evol. 82:51-64.
Graur D. 2016. Molecular and Genome Evolution. Sinauer Associates, Sunderland, MA (717 pp)